Publications

Most of my articles are available on arXiv

For citations see my google scholar page

Submitted for publication/arXiv preprints

23.

S. Bera, M. R. Walker, and M. Vucelja,

Effect of dynamics on anomalous thermal relaxations and information exchange,

arXiv: 2308.04557

22.

M. R. Walker, S. Bera, and M. Vucelja,

Optimal transport and anomalous thermal relaxations,

arXiv: 2307.16103

21.

M. R. Walker and M. Vucelja,

Mpemba effect in terms of mean first passage time,

arXiv: 2212.07496

20.

I. Klich and M. Vucelja,

Solution of the Metropolis dynamics on a complete graph with application to the Markov chain Mpemba effect,

arXiv: 1812.11962

Published papers

19.

H. Zhao and M. Vucelja,

Nonreversible Markov chain Monte Carlo algorithm for efficient generation of self-avoiding walks,

Front. Phys., 9, (2022).

18.

D. Zhang, T. Chen, M. Vucelja, S.-H. Lee, and G.-W. Chern,

Memory effect and phase transition in a hierarchical trap model for spin glass,

Phys. Rev. E, 104, 6, 064105, (2021).

17.

M. R. Walker and M. Vucelja,

Anomalous thermal relaxation of Langevin particles in a piecewise-constant potential,

J. Stat. Mech. (2021) 113105

16.

Y. Guo, M. Vucelja, and A. Amir,

Stochastic tunneling across fitness valleys can give rise to a logarithmic long-term fitness trajectory,

Sci. Adv., 5, eaav3842 (2019).

15.

I. Klich, O. Raz, O. Hirschberg, and M. Vucelja,

The Mpemba index and anomalous relaxation,

Phys. Rev. X., 9, 2, 021060 (2019).

arXiv: 1711.05829

14.

R. Heler, A. V. Wright, M. Vucelja, J. A. Doudna, and L. A. Marraffini,

Spacer Acquisition Rates Determine the Immunological Diversity of the Type II CRISPR-Cas Immune Response,

Cell Host & Microbe, 25, 1, 242-249 (2019).

13.

R. Heler, A. V. Wright, M. Vucelja, J. A. Doudna, and L. A. Marraffini,

Mutations in Cas9 Enhance the Rate of Acquisition of Viral Spacer Sequences during the CRISPR-Cas Immune Response ,

Molecular Cell, 65, 1, 168-175 (2017).

12.

S. Bradde*, M. Vucelja*, T. Tesileanu, and V. Balasubramanian,

Dynamics of adaptive immunity against phage in bacterial populations,

PLoS Comp. Bio., 13, 4, 1-16 (2017).

(*equal contribution)

11.

M. Vucelja,

Lifting - A nonreversible Markov chain Monte Carlo algorithm,

Am. Jour. of Phys., 84, 12, 958-968 (2016).

10.

M. Vucelja, K. S. Turitsyn, and M. Chertkov,

Extreme-value statistics of work done in stretching a polymer in a gradient flow,

Phys. Rev. E 91, 022123 (2015).

E. Kussell and M. Vucelja,

Non-equilibrium physics and evolution - adaptation, extinction, and ecology: a Key Issues review,

Rep. Prog. Phys. 77, 192602 (2014).

R. Neher, M. Vucelja, M. Mezard, and B. I. Shraiman,

Emergence of clones in sexual populations,

J. Stat. Mech. 01., P01008 (2013).

M. Vucelja, G. Falkovich, and K. S. Turitsyn,

Fractal iso-contours of passive scalar in two-dimensional smooth random flows,

J. Stat. Phys., 147, 424 - 435 (2012).

K. S. Turitsyn, M. Chertkov, and M. Vucelja,

Irreversible Monte Carlo Algorithms for Efficient Sampling,

Physica D 240, 410 - 414 (2011).

G. Falkovich, S. Musacchio, L. Piterbarg, and M. Vucelja,

Inertial particles driven by a telegraph noise,

Phys. Rev. E, 76, 026313 (2007).

(alphabetical order of authors)

M. Vucelja and I. Fouxon,

Weak compressibility of surface wave turbulence,

J. Fluid Mech., 593, 281 - 296 (2007).

M. Vucelja, G. Falkovich, and I. Fouxon,

Clustering of matter in waves and currents,

Phys. Rev. E, 75, 065301(R) (2007).

G. Falkovich, M. G. Stepanov, and M. Vucelja,

Rain initiation time in turbulent warm clouds,

J. Appl. Met., 45 (4), 591 - 599 (2006).

A. Peer, B. Dayan, M. Vucelja, Y. Silberberg, and A. A. Friesem,

Quantum lithography by coherent control of classical light pulses,

Opt. Express, 12 (26), 6600 - 6605 (2004).